Co-expression analysis

Gene ID	Contig4260_at
Gene name
Homology with Arabidopsis	Similar to At4g37980: ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) (HF=5e-2)
Module size	6 genes
NF	0.42
%ile	58.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig4260_at	Contig4260	-	-	5e-2	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	EBem09_SQ001_L06_s_at	EBem09_SQ001_L06	-	-	5e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig2783_s_at	Contig2783	-	-	5e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	HY08D02u_s_at	HY08D02u	-	-	6e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig9459_at	Contig9459	-	-	1e-2	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig2700_x_at	Contig2700	-	-	1e+0	At1g23890	NHL repeat-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	99.5	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.3	99.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
8.6	98.8	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.3	98.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.9	97.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4	97.5	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the maize gene, Zm.3376.1.A1_at, orthologous to the query gene, Contig4260_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	Zm.3376.1.A1_at	At4g37980	hypothetical protein LOC100273263	-	5e-2	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.3573.1.A1_at	At4g37980	peroxidase 54	-	3e-3	At5g06720	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.5819.1.S1_at	At4g37980	-	-	6e-4	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.6877.1.A1_at	At4g37980	hypothetical protein LOC100193287	-	1e-11	At5g61460	MIM (hypersensitive to MMS, irradiation and MMC)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.6905.1.A1_a_at	At4g37980	histone1a	-	6e-1	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.16848.2.A1_at	At4g37980	hypothetical protein LOC100193258	-	1e-7	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.530.1.S1_at	At4g37980	homocysteine S-methyltransferase-3	-	2e-10	At3g25900	HMT-1	O.I.	H.G.	S.X.	Please select
0.29	28.1	RPTR-Zm-M57289-1_s_at	At4g37980	-	-				O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage