CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4260_at

Gene name
Homology with Arabidopsis Similar to At4g37980: ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) (HF=5e-2)

Module size 6 genes

NF 0.42

%ile 58.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig4260_at Contig4260 - - 5e-2 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) O.I. H.G. S.X.
0.57 74.9 0.96 EBem09_SQ001_L06_s_at EBem09_SQ001_L06 - - 5e-1 At5g16470 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.55 72.0 0.95 Contig2783_s_at Contig2783 - - 5e+0 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.35 45.1 0.96 HY08D02u_s_at HY08D02u - - 6e+0 At2g31180 MYB14 (MYB DOMAIN PROTEIN 14) O.I. H.G. S.X.
0.35 45.1 0.96 Contig9459_at Contig9459 - - 1e-2 At5g54800 GPT1 O.I. H.G. S.X.
0.18 18.2 0.96 Contig2700_x_at Contig2700 - - 1e+0 At1g23890 NHL repeat-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.9 99.5 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
11.3 99.3 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.0 98.9 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
8.6 98.8 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
8.3 98.8 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.7 98.6 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.4 98.1 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.9 97.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4 97.5 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.128482.1.S1_x_at, orthologous to the query gene, Contig4260_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 TaAffx.128482.1.S1_x_at At4g37980 - - 5e-1 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) O.I. H.G. S.X.
0.50 72.4 TaAffx.63920.1.A1_at At4g37980 - - 2e+0 At2g02880 mucin-related O.I. H.G. S.X.
0.50 72.4 Ta.8896.1.S1_x_at At4g37980 - - 1e-1 At1g15970 methyladenine glycosylase family protein O.I. H.G. S.X.
0.50 72.4 TaAffx.63920.1.A1_x_at At4g37980 - - 2e+0 At2g02880 mucin-related O.I. H.G. S.X.
0.47 67.9 Ta.8896.2.S1_a_at At4g37980 - - 1e-1 At1g15970 methyladenine glycosylase family protein O.I. H.G. S.X.
0.40 58.4 TaAffx.10980.1.S1_at At4g37980 - - 3e-3 At4g09160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein O.I. H.G. S.X.
0.40 58.4 Ta.8896.2.S1_x_at At4g37980 - - 1e-1 At1g15970 methyladenine glycosylase family protein O.I. H.G. S.X.
0.36 51.9 Ta.7811.2.A1_x_at At4g37980 - - 1e+0 At5g40370 glutaredoxin, putative O.I. H.G. S.X.
0.34 48.1 TaAffx.9339.1.S1_at At4g37980 - - 2e+0 At3g56220 transcription regulator O.I. H.G. S.X.
0.30 40.9 Ta.5091.3.S1_x_at At4g37980 - - 1e-30 At5g18170 GDH1 (GLUTAMATE DEHYDROGENASE 1) O.I. H.G. S.X.
0.27 35.6 Ta.21092.1.S1_at At4g37980 alkaline invertase - 1e-9 At1g22650 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative O.I. H.G. S.X.
0.22 27.1 Ta.18965.2.S1_at At4g37980 - - 7e-2 At1g22480 plastocyanin-like domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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