CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4260_at

Gene name
Homology with Arabidopsis Similar to At4g37980: ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) (HF=5e-2)

Module size 6 genes

NF 0.42

%ile 58.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig4260_at Contig4260 - - 5e-2 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) O.I. H.G. S.X.
0.57 74.9 0.96 EBem09_SQ001_L06_s_at EBem09_SQ001_L06 - - 5e-1 At5g16470 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.55 72.0 0.95 Contig2783_s_at Contig2783 - - 5e+0 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.35 45.1 0.96 HY08D02u_s_at HY08D02u - - 6e+0 At2g31180 MYB14 (MYB DOMAIN PROTEIN 14) O.I. H.G. S.X.
0.35 45.1 0.96 Contig9459_at Contig9459 - - 1e-2 At5g54800 GPT1 O.I. H.G. S.X.
0.18 18.2 0.96 Contig2700_x_at Contig2700 - - 1e+0 At1g23890 NHL repeat-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.9 99.5 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
11.3 99.3 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.0 98.9 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
8.6 98.8 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
8.3 98.8 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.7 98.6 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.4 98.1 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.9 97.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4 97.5 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.5323.1.S1_at, orthologous to the query gene, Contig4260_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 PtpAffx.5323.1.S1_at At4g37980 cinnamyl alcohol dehydrogenase-like protein - 7e-4 At4g37970 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) O.I. H.G. S.X.
0.73 93.6 PtpAffx.224189.1.S1_at At4g37980 hypothetical protein - 8e-4 At4g34135 UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2) O.I. H.G. S.X.
0.60 86.0 Ptp.4116.1.S1_s_at At4g37980 hypothetical protein - 3e-2 At3g51680 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.57 84.2 Ptp.4116.1.S1_at At4g37980 - - 3e-2 At3g51680 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.46 73.7 PtpAffx.249.686.S1_at At4g37980 hypothetical protein - 9e-1 At5g02550 unknown protein O.I. H.G. S.X.
0.29 50.5 PtpAffx.211043.1.S1_at At4g37980 hypothetical protein - 7e-6 At5g38930 germin-like protein, putative O.I. H.G. S.X.
0.11 18.1 PtpAffx.1759.1.S1_at At4g37980 hypothetical protein - 6e-1 At5g60620 phospholipid/glycerol acyltransferase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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