Co-expression analysis

Gene ID	Contig4218_at
Gene name
Homology with Arabidopsis	Similar to At1g26270: phosphatidylinositol 3- and 4-kinase family protein (HF=1e-19)
Module size	9 genes
NF	0.44
%ile	61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.96	Contig4218_at	Contig4218	-	-	1e-19	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig2828_at	Contig2828	-	-	2e-50	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig2940_s_at	Contig2940	-	-	5e-6	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	Contig19935_at	Contig19935	-	-	2e-6	At3g58000	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	Contig4893_at	Contig4893	-	-	2e-25	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	Contig8718_at	Contig8718	-	-	7e+0	Atmg00150	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	HVSMEm0005B11r2_x_at	HVSMEm0005B11r2	-	-	4e+0	At2g36020	HVA22J (HVA22-LIKE PROTEIN J)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.97	Contig2821_at	Contig2821	-	-	1e-72	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig3120_at	Contig3120	-	-	4e-2	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.5	96.7	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.3	96.4	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.0	96.0	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.9	95.8	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.8	95.7	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.6	95.3	GSM71148	OWB-R unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.6	95.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.9	93.4	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.8	93.1	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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