CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4175_at

Gene name
Homology with Arabidopsis Similar to At3g07100: protein transport protein Sec24, putative (HF=1e-19)

Module size 6 genes

NF 0.80

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 Contig4175_at Contig4175 - - 1e-19 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.80 92.5 0.97 Contig4760_s_at Contig4760 - - 1e+0 At4g38700 disease resistance-responsive family protein O.I. H.G. S.X.
0.73 88.7 0.97 Contig5297_at Contig5297 - - 4e-16 At1g64550 ATGCN3 O.I. H.G. S.X.
0.71 87.1 0.97 Contig11464_at Contig11464 - - 6e-20 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) O.I. H.G. S.X.
0.67 84.7 0.97 Contig5117_at Contig5117 - - 8e-2 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein O.I. H.G. S.X.
0.61 78.7 0.97 Contig6995_at Contig6995 - - 2e-8 At5g57270 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.97	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.
0.80	92.5	0.97	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	O.I.	H.G.	S.X.
0.73	88.7	0.97	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.
0.71	87.1	0.97	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.
0.67	84.7	0.97	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.
0.61	78.7	0.97	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig10102_at	Contig10102	-	-	9e-1	At5g08130	BIM1	O.I.	H.G.	S.X.
0.63	80.3	0.93	HS08H22u_s_at	HS08H22u	-	-	5e+0	At4g27780	ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2)	O.I.	H.G.	S.X.
0.60	77.3	0.95	Contig5978_at	Contig5978	-	-	2e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	O.I.	H.G.	S.X.
0.60	77.3	0.96	EBem10_SQ003_I08_s_at	EBem10_SQ003_I08	-	-	2e+0	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.
0.60	77.3	0.96	Contig4806_at	Contig4806	-	-	4e-1	At4g08685	SAH7	O.I.	H.G.	S.X.
0.60	77.3	0.96	Contig21572_at	Contig21572	-	-	5e-1	At5g48655	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.56	74.3	0.96	Contig6581_at	Contig6581	-	-	6e-2	At3g26330	CYP71B37	O.I.	H.G.	S.X.
0.55	72.0	0.94	Contig17844_at	Contig17844	-	-	2e+0	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.
0.55	72.0	0.94	Contig14122_at	Contig14122	-	-	3e-1	At5g01881	unknown protein	O.I.	H.G.	S.X.
0.55	72.0	0.96	Contig10908_at	Contig10908	-	-	4e-25	At5g04560	DME (DEMETER)	O.I.	H.G.	S.X.
0.53	69.7	0.96	Contig7191_at	Contig7191	-	-	3e+0	At5g17950	unknown protein	O.I.	H.G.	S.X.
0.53	69.7	0.96	Contig8870_at	Contig8870	-	-	1e-10	At5g56290	PEX5 (PEROXIN 5)	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig13429_at	Contig13429	-	-	1e+0	At5g16550	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig2670_x_at	Contig2670	-	-	5e-20	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig14405_at	Contig14405	-	-	7e-1	At1g71050	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig14361_at	Contig14361	-	-	2e-1	At2g11005	glycine-rich protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig7278_at	Contig7278	-	-	7e-2	At2g45980	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig7546_s_at	Contig7546	-	-	1e+0	At1g63950	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig725_s_at	Contig725	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	O.I.	H.G.	S.X.
0.48	63.2	0.96	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.95	Contig9977_at	Contig9977	-	-	2e-2	At5g49550	unknown protein	O.I.	H.G.	S.X.
0.44	58.9	0.95	Contig15529_at	Contig15529	-	-	7e-19	At5g39900	GTP binding / GTPase/ translation elongation factor	O.I.	H.G.	S.X.
0.44	58.9	0.95	Contig14780_at	Contig14780	-	-	3e-1	At2g35960	NHL12	O.I.	H.G.	S.X.
0.44	58.9	0.95	Contig14726_at	Contig14726	-	-	2e+0	At3g10020	unknown protein	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig3532_at	Contig3532	-	-	8e+0	At4g32605	-	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig12105_at	Contig12105	-	-	2e-2	At3g52640	nicastrin-related	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig10043_at	Contig10043	-	-	8e-38	At5g13280	AK-LYS1 (ASPARTATE KINASE 1)	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig9328_s_at	Contig9328	-	-	5e-7	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	O.I.	H.G.	S.X.
0.44	58.9	0.96	HVSMEc0019C19f_at	HVSMEc0019C19f	-	-	0	Atcg00020	-	O.I.	H.G.	S.X.
0.43	56.4	0.96	Contig18254_at	Contig18254	-	-	2e-1	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.
0.42	55.2	0.94	Contig19730_at	Contig19730	-	-	1e+0	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	O.I.	H.G.	S.X.
0.42	55.2	0.94	Contig10644_at	Contig10644	-	-	5e-79	At4g00660	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.
0.42	55.2	0.95	Contig25599_at	Contig25599	-	-	4e+0	At4g10595	LCR2 (Low-molecular-weight cysteine-rich 2)	O.I.	H.G.	S.X.
0.42	55.2	0.95	Contig1460_x_at	Contig1460	-	-	6e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	O.I.	H.G.	S.X.
0.40	53.1	0.93	Contig4684_at	Contig4684	-	-	5e-17	At3g10670	ATNAP7	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig13150_at	Contig13150	-	-	4e+0	At5g51510	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig21104_at	Contig21104	-	-	1e-3	At1g23030	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig12397_at	Contig12397	-	-	4e-2	At2g24590	splicing factor, putative	O.I.	H.G.	S.X.
0.40	53.1	0.95	Contig13169_at	Contig13169	-	-	2e-24	At1g76860	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig22535_at	Contig22535	-	-	7e+0	At5g06330	hairpin-responsive protein, putative (HIN1)	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig6232_at	Contig6232	-	-	8e-1	At2g01720	ribophorin I family protein	O.I.	H.G.	S.X.
0.38	49.5	0.95	Contig7098_at	Contig7098	-	-	1e-2	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	O.I.	H.G.	S.X.
0.36	47.1	0.95	Contig7665_at	Contig7665	-	-	5e-9	At3g14830	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.95	Contig9027_at	Contig9027	-	-	1e+1	At4g09830	-	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig18385_at	Contig18385	-	-	2e+0	Atmg01170	-	O.I.	H.G.	S.X.
0.33	42.6	0.94	Contig1180_at	Contig1180	-	-	4e-20	At1g07790	HTB1	O.I.	H.G.	S.X.
0.33	42.6	0.94	Contig16323_at	Contig16323	-	-	1e+0	At5g10970	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.33	42.6	0.94	Contig9005_at	Contig9005	-	-	1e-14	At3g05280	integral membrane Yip1 family protein	O.I.	H.G.	S.X.
0.33	42.6	0.94	HVSMEa0015B19r2_x_at	HVSMEa0015B19r2	-	-	4e+0	At5g04070	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.33	42.6	0.94	Contig19427_at	Contig19427	-	-	2e+1	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.2 98.5 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.9 98.3 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.2 96.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.2 96.3 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.8 95.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.2	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Contig4175_at
Gene name
Homology with Arabidopsis	Similar to At3g07100: protein transport protein Sec24, putative (HF=1e-19)
Module size	6 genes
NF	0.80
%ile	96.8

Co-expression analysis

Gene ID Contig4175_at Gene name Homology with ArabidopsisSimilar to At3g07100: protein transport protein Sec24, putative (HF=1e-19) Module size 6 genes NF 0.80 %ile 96.8

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig4175_at

Gene name
Homology with Arabidopsis Similar to At3g07100: protein transport protein Sec24, putative (HF=1e-19)

Module size 6 genes

NF 0.80

%ile 96.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays