Co-expression analysis

Gene ID	Contig4175_at
Gene name
Homology with Arabidopsis	Similar to At3g07100: protein transport protein Sec24, putative (HF=1e-19)
Module size	6 genes
NF	0.80
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.97	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.207677.1.S1_s_at, orthologous to the query gene, Contig4175_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	PtpAffx.207677.1.S1_s_at	At3g07100	hypothetical protein	-	2e-73	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.120301.1.S1_s_at	At3g07100	hypothetical protein	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.163275.2.S1_at	At3g07100	hypothetical protein	-	1e-13	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.3977.1.S1_s_at	At3g07100	hypothetical protein	-	2e-18	At5g52040	ATRSP41	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.156707.1.S1_s_at	At3g07100	hypothetical protein	-	4e-4	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.85760.1.S1_s_at	At3g07100	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.163432.1.S1_s_at	At3g07100	hypothetical protein	-	6e-58	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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