CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4175_at

Gene name
Homology with Arabidopsis Similar to At3g07100: protein transport protein Sec24, putative (HF=1e-19)

Module size 6 genes

NF 0.80

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 Contig4175_at Contig4175 - - 1e-19 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.80 92.5 0.97 Contig4760_s_at Contig4760 - - 1e+0 At4g38700 disease resistance-responsive family protein O.I. H.G. S.X.
0.73 88.7 0.97 Contig5297_at Contig5297 - - 4e-16 At1g64550 ATGCN3 O.I. H.G. S.X.
0.71 87.1 0.97 Contig11464_at Contig11464 - - 6e-20 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) O.I. H.G. S.X.
0.67 84.7 0.97 Contig5117_at Contig5117 - - 8e-2 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein O.I. H.G. S.X.
0.61 78.7 0.97 Contig6995_at Contig6995 - - 2e-8 At5g57270 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.2 98.5 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.9 98.3 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.2 96.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.2 96.3 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.8 95.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os04g0129500, orthologous to the query gene, Contig4175_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os04g0129500 At3g07100 - Sec23/Sec24 zinc finger domain containing protein 7e-31 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.50 68.0 Os03g0281600 At3g07100 - Ca2+-ATPase 1e-63 At1g07670 calcium-transporting ATPase O.I. H.G. S.X.
0.38 46.9 Os03g0112400 At3g07100 - AP2 adaptor, appendage domain containing protein 5e-2 At5g22770 alpha-ADR (alpha-adaptin) O.I. H.G. S.X.
0.38 46.9 Os02g0537900 At3g07100 - Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1) 5e-87 At1g16780 vacuolar-type H+-translocating inorganic pyrophosphatase, putative O.I. H.G. S.X.
0.36 44.0 Os03g0427900 At3g07100 - U box domain containing protein 1e-4 At5g15400 U-box domain-containing protein O.I. H.G. S.X.
0.27 27.5 Os07g0657200 At3g07100 - WD40-like domain containing protein 3e-8 At3g63460 WD-40 repeat family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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