Co-expression analysis

Gene ID Contig416_x_at
Gene name
Homology with ArabidopsisSimilar to At4g24190: SHD (SHEPHERD) (HF=5e-29)
Module size 6 genes
NF 0.65
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4863.20.96Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.7388.70.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.7187.10.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.6784.70.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.5975.80.96rbaak4i15_s_atrbaak4i15--2e-6At5g08680ATP synthase beta chain, mitochondrial, putativeO.I.H.G.S.X.
0.5572.00.96HA06i14r_s_atHA06i14r--8e-4At5g15650RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.397.4GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.197.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.696.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.296.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.91200.1.S1_s_at, orthologous to the query gene, Contig416_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9298.9GmaAffx.91200.1.S1_s_atAt4g24190--1e-40At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.5374.2GmaAffx.91374.1.S1_s_atAt4g24190heat shock protein 90-1-0At5g56010HSP81-3O.I.H.G.S.X.
0.5374.2GmaAffx.90401.1.S1_x_atAt4g24190heat shock protein 90-2-3e-23At5g56010HSP81-3O.I.H.G.S.X.
0.5374.2Gma.9981.1.S1_atAt4g24190--9e-46At5g27470seryl-tRNA synthetase / serine--tRNA ligaseO.I.H.G.S.X.
0.5273.1Gma.2256.2.A1_atAt4g24190--1e-3At1g61570TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)O.I.H.G.S.X.
0.5172.3GmaAffx.91512.1.S1_s_atAt4g24190--2e-21At5g2785060S ribosomal protein L18 (RPL18C)O.I.H.G.S.X.
0.5172.3Gma.3002.1.S1_atAt4g24190--5e-44At4g2574040S ribosomal protein S10 (RPS10A)O.I.H.G.S.X.
0.5071.7Gma.1465.1.S1_s_atAt4g24190ribosomal protein S11-2e-15At5g23740RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)O.I.H.G.S.X.
0.4766.6GmaAffx.92880.1.S1_s_atAt4g24190peroxisomal voltage-dependent anion-selective channel protein-4e-10At3g01280VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)O.I.H.G.S.X.
0.4766.6GmaAffx.91220.1.S1_s_atAt4g24190--4e-87At3g11940ATRPS5A (RIBOSOMAL PROTEIN 5A)O.I.H.G.S.X.
0.4563.9Gma.15789.1.S1_s_atAt4g24190--7e-30At3g11940ATRPS5A (RIBOSOMAL PROTEIN 5A)O.I.H.G.S.X.
0.4563.9Gma.11303.1.S1_s_atAt4g24190--1e-90At1g0448060S ribosomal protein L23 (RPL23A)O.I.H.G.S.X.
0.4463.3Gma.4113.1.S1_atAt4g24190--2e-9At1g33140PGY2 (PIGGYBACK2)O.I.H.G.S.X.
0.4463.3Gma.756.1.S1_s_atAt4g2419040S ribosomal S4 protein-2e-124At5g0709040S ribosomal protein S4 (RPS4B)O.I.H.G.S.X.
0.4463.3GmaAffx.93118.1.S1_s_atAt4g24190acidic ribosomal protein P0-2e-55At2g4001060S acidic ribosomal protein P0 (RPP0A)O.I.H.G.S.X.
0.4360.6GmaAffx.90748.1.S1_atAt4g24190--8e-54At5g2806040S ribosomal protein S24 (RPS24B)O.I.H.G.S.X.
0.4259.3Gma.6161.1.S1_atAt4g24190--1e-38At1g33140PGY2 (PIGGYBACK2)O.I.H.G.S.X.
0.4259.3GmaAffx.88761.1.S1_s_atAt4g24190--7e-33At2g3939060S ribosomal protein L35 (RPL35B)O.I.H.G.S.X.
0.4057.1Gma.11290.1.S1_atAt4g24190--1e-40At3g5343060S ribosomal protein L12 (RPL12B)O.I.H.G.S.X.
0.4057.1Gma.16404.1.S1_atAt4g24190--2e-9At3g2223060S ribosomal protein L27 (RPL27B)O.I.H.G.S.X.
0.3954.5Gma.18010.1.S1_x_atAt4g24190--5e-25At3g0423040S ribosomal protein S16 (RPS16B)O.I.H.G.S.X.
0.3853.3Gma.2587.1.S1_s_atAt4g24190--2e-37At5g66140PAD2 (PROTEASOME ALPHA SUBUNIT D 2)O.I.H.G.S.X.
0.3853.3GmaAffx.93249.1.S1_s_atAt4g24190--5e-35At4g3467040S ribosomal protein S3A (RPS3aB)O.I.H.G.S.X.
0.3142.2GmaAffx.91582.1.S1_s_atAt4g24190--5e-4At5g14030translocon-associated protein beta (TRAPB) family proteinO.I.H.G.S.X.
0.1316.3Gma.5152.2.S1_atAt4g24190--7e-11At1g76400ribophorin I family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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