Co-expression analysis

Gene ID Contig4157_s_at
Gene name
Homology with ArabidopsisSimilar to At1g60780: HAP13 (HAPLESS 13) (HF=1e-25)
Module size 12 genes
NF 0.49
%ile 68.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.93Contig4157_s_atContig4157--1e-25At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.6380.30.96Contig7047_atContig7047--7e-2At5g03660unknown proteinO.I.H.G.S.X.
0.6077.30.94Contig16098_atContig16098--2e+0At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5874.90.95HW04B18u_s_atHW04B18u--8e+0At5g09560KH domain-containing proteinO.I.H.G.S.X.
0.5167.50.93Contig3250_atContig3250--1e-68At3g14940ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)O.I.H.G.S.X.
0.5066.90.96Contig7843_atContig7843--1e+0At4g30820cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-relatedO.I.H.G.S.X.
0.4762.20.96Contig21820_atContig21820--2e+0At5g59820RHL41 (RESPONSIVE TO HIGH LIGHT 41)O.I.H.G.S.X.
0.4053.10.94Contig5801_atContig5801--4e-25At3g52140tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.4053.10.96HVSMEg0005I18r2_atHVSMEg0005I18r2--4e+0At5g56300GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.3849.50.95rbaak32b03_s_atrbaak32b03--4e-13At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)O.I.H.G.S.X.
0.3747.90.94Contig7336_s_atContig7336--5e+0At3g26520TIP2 (TONOPLAST INTRINSIC PROTEIN 2)O.I.H.G.S.X.
0.3747.90.94Contig12123_atContig12123--7e-1At1g16240SYP51 (SYNTAXIN OF PLANTS 51)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.498.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.897.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.897.0GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.796.9GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.196.2GSM440973Stressed awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage