Co-expression analysis

Gene ID Contig4102_at
Gene name
Homology with ArabidopsisSimilar to At4g10970: unknown protein (HF=2e-3)
Module size 18 genes
NF 0.06
%ile 7.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.73Contig4102_atContig4102--2e-3At4g10970unknown proteinO.I.H.G.S.X.
0.3443.60.88Contig676_atContig676--2e-20At5g10980histone H3O.I.H.G.S.X.
0.2732.10.89Contig16504_atContig16504--3e+0At1g20470auxin-responsive family proteinO.I.H.G.S.X.
0.2630.40.82Contig12839_atContig12839--2e+0At1g59171ATP binding / inositol pentakisphosphate 2-kinaseO.I.H.G.S.X.
0.2528.90.88EBpi03_SQ003_I06_atEBpi03_SQ003_I06--8e-1At5g16090-O.I.H.G.S.X.
0.2326.10.88Contig3521_atContig3521--1e-3At4g30010unknown proteinO.I.H.G.S.X.
0.2326.10.80Contig4104_atContig4104--1e-19At1g73230nascent polypeptide-associated complex (NAC) domain-containing proteinO.I.H.G.S.X.
0.2122.60.88Contig13918_atContig13918--4e-1At5g25540CID6 (CTC-Interacting Domain 6)O.I.H.G.S.X.
0.2021.10.88Contig1127_atContig1127--8e-24At1g07790HTB1O.I.H.G.S.X.
0.1919.60.89Contig7379_atContig7379--1e-11At3g03330short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.1412.90.90Contig13984_atContig13984--6e-7At5g07030aspartic-type endopeptidaseO.I.H.G.S.X.
0.1210.40.91Contig4899_s_atContig4899--2e-2At2g01140fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.1210.40.90Contig16283_atContig16283--9e-2At3g61898unknown proteinO.I.H.G.S.X.
0.086.50.88Contig7628_atContig7628--3e-12At5g56840DNA-binding family proteinO.I.H.G.S.X.
0.021.80.86Contig6322_atContig6322--4e-21At1g76670transporter-relatedO.I.H.G.S.X.
0.021.80.85HS07F05u_atHS07F05u--1e+0At1g11940unknown proteinO.I.H.G.S.X.
0.021.80.86HS09E20r_s_atHS09E20r--3e+0At3g47836unknown proteinO.I.H.G.S.X.
0.021.80.85Contig10959_atContig10959--4e-37At4g09630-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.898.6GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.591.9GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.491.4GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
2.491.4GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.491.4GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.390.9GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.390.9GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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