CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4102_at

Gene name
Homology with Arabidopsis Similar to At4g10970: unknown protein (HF=2e-3)

Module size 18 genes

NF 0.06

%ile 7.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.1 0.73 Contig4102_at Contig4102 - - 2e-3 At4g10970 unknown protein O.I. H.G. S.X.
0.34 43.6 0.88 Contig676_at Contig676 - - 2e-20 At5g10980 histone H3 O.I. H.G. S.X.
0.27 32.1 0.89 Contig16504_at Contig16504 - - 3e+0 At1g20470 auxin-responsive family protein O.I. H.G. S.X.
0.26 30.4 0.82 Contig12839_at Contig12839 - - 2e+0 At1g59171 ATP binding / inositol pentakisphosphate 2-kinase O.I. H.G. S.X.
0.25 28.9 0.88 EBpi03_SQ003_I06_at EBpi03_SQ003_I06 - - 8e-1 At5g16090 - O.I. H.G. S.X.
0.23 26.1 0.88 Contig3521_at Contig3521 - - 1e-3 At4g30010 unknown protein O.I. H.G. S.X.
0.23 26.1 0.80 Contig4104_at Contig4104 - - 1e-19 At1g73230 nascent polypeptide-associated complex (NAC) domain-containing protein O.I. H.G. S.X.
0.21 22.6 0.88 Contig13918_at Contig13918 - - 4e-1 At5g25540 CID6 (CTC-Interacting Domain 6) O.I. H.G. S.X.
0.20 21.1 0.88 Contig1127_at Contig1127 - - 8e-24 At1g07790 HTB1 O.I. H.G. S.X.
0.19 19.6 0.89 Contig7379_at Contig7379 - - 1e-11 At3g03330 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.14 12.9 0.90 Contig13984_at Contig13984 - - 6e-7 At5g07030 aspartic-type endopeptidase O.I. H.G. S.X.
0.12 10.4 0.91 Contig4899_s_at Contig4899 - - 2e-2 At2g01140 fructose-bisphosphate aldolase, putative O.I. H.G. S.X.
0.12 10.4 0.90 Contig16283_at Contig16283 - - 9e-2 At3g61898 unknown protein O.I. H.G. S.X.
0.08 6.5 0.88 Contig7628_at Contig7628 - - 3e-12 At5g56840 DNA-binding family protein O.I. H.G. S.X.
0.02 1.8 0.86 Contig6322_at Contig6322 - - 4e-21 At1g76670 transporter-related O.I. H.G. S.X.
0.02 1.8 0.85 HS07F05u_at HS07F05u - - 1e+0 At1g11940 unknown protein O.I. H.G. S.X.
0.02 1.8 0.86 HS09E20r_s_at HS09E20r - - 3e+0 At3g47836 unknown protein O.I. H.G. S.X.
0.02 1.8 0.85 Contig10959_at Contig10959 - - 4e-37 At4g09630 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 98.6 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.1 94.1 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
2.5 91.9 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4 91.4 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
2.4 91.4 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4 91.4 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
2.3 90.9 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.3 90.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.3 90.9 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage