CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4070_s_at

Gene name
Homology with Arabidopsis Similar to At5g65620: peptidase M3 family protein / thimet oligopeptidase family protein (HF=4e-22)

Module size 18 genes

NF 0.50

%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 87.4 0.96 Contig4070_s_at Contig4070 - - 4e-22 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein O.I. H.G. S.X.
0.70 86.0 0.97 Contig3243_x_at Contig3243 - - 6e-4 At1g44970 peroxidase, putative O.I. H.G. S.X.
0.65 81.4 0.98 Contig13430_s_at Contig13430 - - 6e-5 At5g21930 PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2) O.I. H.G. S.X.
0.63 80.3 0.97 Contig18185_at Contig18185 - - 5e+0 At2g30120 unknown protein O.I. H.G. S.X.
0.58 74.9 0.97 Contig16002_at Contig16002 - - 2e+0 At4g31800 WRKY18 O.I. H.G. S.X.
0.56 74.3 0.98 Contig23438_at Contig23438 - - 2e+0 At1g57860 60S ribosomal protein L21 O.I. H.G. S.X.
0.54 70.3 0.97 Contig14534_at Contig14534 - - 7e-1 At1g64930 CYP89A7 O.I. H.G. S.X.
0.52 68.3 0.97 Contig14535_at Contig14535 - - 5e-1 At1g08830 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) O.I. H.G. S.X.
0.48 63.2 0.97 Contig3923_at Contig3923 - - 4e-1 At3g04460 PEX12 O.I. H.G. S.X.
0.47 62.2 0.97 Contig13661_at Contig13661 - - 2e+0 At2g32885 - O.I. H.G. S.X.
0.46 61.0 0.98 Contig19788_at Contig19788 - - 3e-1 At4g26840 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) O.I. H.G. S.X.
0.46 61.0 0.97 Contig22688_at Contig22688 - - 2e+0 At2g01860 EMB975 (EMBRYO DEFECTIVE 975) O.I. H.G. S.X.
0.44 58.9 0.97 HI02E24u_s_at HI02E24u - - 8e-36 At2g36620 RPL24A (ribosomal protein L24) O.I. H.G. S.X.
0.41 53.9 0.97 Contig18195_at Contig18195 - - 7e+0 At3g56500 serine-rich protein-related O.I. H.G. S.X.
0.36 47.1 0.98 Contig20936_at Contig20936 - - 3e-5 At3g21175 ZML1 (ZIM-LIKE 1) O.I. H.G. S.X.
0.34 43.6 0.98 HS18F06u_s_at HS18F06u - - 7e-14 At2g47610 60S ribosomal protein L7A (RPL7aA) O.I. H.G. S.X.
0.33 42.6 0.98 HY09M22u_s_at HY09M22u - - 3e+0 At2g04378 beta-galactosidase O.I. H.G. S.X.
0.32 40.3 0.97 Contig16972_at Contig16972 - - 5e-10 At5g64813 LIP1 (Light Insensitive Period1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 97.6 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1 96.2 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.0 96.0 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.6 95.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0 93.8 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.0 93.8 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.7 92.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.7 92.7 GSM238439 Embryo 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage