Co-expression analysis

Gene ID	Contig3992_at
Gene name
Homology with Arabidopsis	Similar to At1g14670: endomembrane protein 70, putative (HF=1e-40)
Module size	8 genes
NF	0.78
%ile	95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	0.96	Contig3992_at	Contig3992	-	-	1e-40	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	Contig5182_at	Contig5182	-	-	9e-34	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.98	Contig3018_at	Contig3018	-	-	2e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.97	Contig7652_at	Contig7652	-	-	3e-3	At3g56660	BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig5492_at	Contig5492	-	-	1e-7	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig5260_s_at	Contig5260	-	-	0	At2g29630	THIC (ThiaminC)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.97	Contig18164_at	Contig18164	-	-	1e-11	At1g20920	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.97	Contig20916_at	Contig20916	-	-	3e-1	At5g66160	JR700	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5	97.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.2	94.3	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.9	93.4	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
2.8	93.1	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.5	91.9	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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