Co-expression analysis

Gene ID Contig3968_at
Gene name
Homology with ArabidopsisSimilar to At5g47040: LON2 (LON PROTEASE 2) (HF=3e-45)
Module size 7 genes
NF 0.31
%ile 41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.93Contig3968_atContig3968--3e-45At5g47040LON2 (LON PROTEASE 2)O.I.H.G.S.X.
0.3950.50.93Contig6895_atContig6895--1e+1At5g28390RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3443.60.92Contig9923_atContig9923--4e+0At5g49050-O.I.H.G.S.X.
0.2732.10.93HK04P18r_s_atHK04P18rCesA6 protein-2e+1Atcg00130-O.I.H.G.S.X.
0.2732.10.93Contig14638_atContig14638--4e-35At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.2326.10.92HVSMEg0016A08f_atHVSMEg0016A08f--4e+0At2g20585NFD6 (NUCLEAR FUSION DEFECTIVE 6)O.I.H.G.S.X.
0.1919.60.94HVSMEf0014I15r2_x_atHVSMEf0014I15r2--2e+0At5g48000CYP708A2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.297.4GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.796.9GSM431570pathogen isolates: Mock inoculated control - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.796.9GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.296.3GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.096.0GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.995.8GSM431571pathogen isolates: Polymyxa betae - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.795.5GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.795.5GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.494.8GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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