Co-expression analysis

Gene ID	Contig3953_s_at
Gene name
Homology with Arabidopsis	Similar to At4g29660: EMB2752 (EMBRYO DEFECTIVE 2752) (HF=5e+0)
Module size	11 genes
NF	0.13
%ile	16.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.89	Contig3953_s_at	Contig3953	-	-	5e+0	At4g29660	EMB2752 (EMBRYO DEFECTIVE 2752)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.93	Contig17102_at	Contig17102	-	-	2e+0	At4g30250	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig17722_at	Contig17722	-	-	4e+0	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig16318_at	Contig16318	-	-	7e-2	At3g56790	RNA splicing factor-related	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig11483_at	Contig11483	-	-	2e-1	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig832_s_at	Contig832	-	-	9e-6	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig17478_at	Contig17478	-	-	2e+0	At2g17695	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig5782_at	Contig5782	-	-	9e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.93	Contig5150_s_at	Contig5150	-	-	2e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.93	HT07M21u_s_at	HT07M21u	-	-	2e+0	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.92	HM04B09u_s_at	HM04B09u	-	-	3e+0	At5g27606	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8	95.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.7	95.5	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.6	95.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1	94.1	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.0	93.8	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.9	93.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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