Co-expression analysis

Gene ID	Contig394_at
Gene name
Homology with Arabidopsis	Similar to At5g42850: - (HF=1e+0)
Module size	6 genes
NF	0.88
%ile	98.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	1.00	Contig394_at	Contig394	-	-	1e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.83	94.0	1.00	Contig8819_s_at	Contig8819	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	1.00	HVSMEk0006G04r2_at	HVSMEk0006G04r2	-	-	2e-1	At4g37790	HAT22	O.I.	H.G.	S.X.	Please select
0.83	94.0	1.00	Contig8821_at	Contig8821	-	-	4e-9	At5g45190	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	1.00	EBan01_SQ005_B22_s_at	EBan01_SQ005_B22	-	-	5e+0	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	1.00	Contig20753_at	Contig20753	-	-	5e-7	At2g20900	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
52.8	100.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
52.1	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.6	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.3	99.0	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9	97.9	GSM372970	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.4	97.5	GSM373009	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM373006	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1615805_at, orthologous to the query gene, Contig394_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.8	1615805_at	At5g42850	-	-	1e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.73	90.8	1610801_at	At5g42850	similar to Glutamate decarboxylase	-	8e-62	At3g17760	GAD5 (glutamate decarboxylase 5)	O.I.	H.G.	S.X.	Please select
0.73	90.8	1620568_at	At5g42850	-	-	4e-15	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1614985_at	At5g42850	hypothetical protein LOC100268005	-	3e-71	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.59	80.6	1618125_at	At5g42850	hypothetical protein LOC100261276	-	9e-23	At2g36580	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please select
0.56	79.4	1622542_a_at	At5g42850	oxalyl-CoA decarboxylase-like	-	5e-9	At5g17380	pyruvate decarboxylase family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1619981_at	At5g42850	similar to MtN19-like protein	-	8e-7	At5g61820	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	1608251_at	At5g42850	similar to Glutamate decarboxylase	-	5e+0	At4g25950	VATG3 (vacuolar ATP synthase G3)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1608802_s_at	At5g42850	hypothetical protein LOC100268002	-	3e-29	At5g45020	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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