Co-expression analysis

Gene ID	Contig394_at
Gene name
Homology with Arabidopsis	Similar to At5g42850: - (HF=1e+0)
Module size	6 genes
NF	0.88
%ile	98.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	1.00	Contig394_at	Contig394	-	-	1e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.83	94.0	1.00	Contig8819_s_at	Contig8819	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	1.00	HVSMEk0006G04r2_at	HVSMEk0006G04r2	-	-	2e-1	At4g37790	HAT22	O.I.	H.G.	S.X.	Please select
0.83	94.0	1.00	Contig8821_at	Contig8821	-	-	4e-9	At5g45190	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	1.00	EBan01_SQ005_B22_s_at	EBan01_SQ005_B22	-	-	5e+0	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	1.00	Contig20753_at	Contig20753	-	-	5e-7	At2g20900	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
52.8	100.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
52.1	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.6	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.3	99.0	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9	97.9	GSM372970	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.4	97.5	GSM373009	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM373006	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.249.846.A1_s_at, orthologous to the query gene, Contig394_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	PtpAffx.249.846.A1_s_at	At5g42850	hypothetical protein	-	1e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.6063.1.S1_at	At5g42850	hypothetical protein	-	8e-9	At5g06660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.55359.1.S1_at	At5g42850	hypothetical protein	-	8e-12	At2g14110	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.156899.1.S1_at	At5g42850	hypothetical protein	-	3e-2	At4g33690	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.1165.2.S1_a_at	At5g42850	predicted membrane protein /// predicted membrane protein /// predicted membrane protein	-	2e-21	At1g25520	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.12802.1.A1_s_at	At5g42850	hypothetical protein	-	1e-32	At3g26670	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.76768.1.S1_at	At5g42850	hypothetical protein	-	2e-52	At5g28850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.44174.1.A1_at	At5g42850	hypothetical protein	-	2e-8	At5g05987	PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.200287.1.S1_at	At5g42850	hypothetical protein	-	2e-12	At4g20280	TAF11 (TBP-ASSOCIATED FACTOR 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.308.1.A1_s_at	At5g42850	hypothetical protein	-	7e-37	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.4495.2.S1_a_at	At5g42850	hypothetical protein	-	2e-19	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.158.1.S1_at	At5g42850	5-formyltetrahydrofolate cyclo-ligase	-	6e+0	At5g35300	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.2333.2.A1_at	At5g42850	hypothetical protein	-	5e-6	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.119499.2.A1_s_at	At5g42850	hypothetical protein	-	3e-52	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	Ptp.5458.1.S1_s_at	At5g42850	hypothetical protein	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.218751.1.S1_s_at	At5g42850	hypothetical protein	-	1e-7	At3g06110	MKP2 (MAPK PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.6779.1.S1_at	At5g42850	-	-	5e-3	At2g28430	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.56762.1.S1_at	At5g42850	hypothetical protein	-	3e-17	At3g28720	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.113217.1.S1_s_at	At5g42850	hypothetical protein	-	1e-32	At2g25310	carbohydrate binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.22996.1.A1_at	At5g42850	hypothetical protein	-	7e-10	At3g16200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.2074.1.A1_at	At5g42850	hypothetical protein	-	5e-7	At2g40380	PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	Ptp.2243.1.S1_at	At5g42850	-	-	2e-3	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	Ptp.4365.1.S1_at	At5g42850	hypothetical protein	-	4e-33	At1g30300	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	Ptp.89.1.S1_s_at	At5g42850	hypothetical protein	-	4e-1	At2g02510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.132816.1.S1_at	At5g42850	hypothetical protein	-	3e-13	At2g05320	beta-1,2-N-acetylglucosaminyltransferase II	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.10371.2.S1_a_at	At5g42850	hypothetical protein	-	9e-12	At2g36300	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.18233.1.S1_a_at	At5g42850	hypothetical protein	-	5e-3	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.4686.1.A1_at	At5g42850	hypothetical protein	-	1e-16	At4g13360	catalytic	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.4599.1.A1_at	At5g42850	hypothetical protein	-	4e-1	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.11459.1.A1_at	At5g42850	hypothetical protein	-	2e-9	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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