Co-expression analysis

Gene ID Contig3932_at
Gene name
Homology with ArabidopsisSimilar to At1g16230: syntaxin-related family protein (HF=2e-3)
Module size 6 genes
NF 0.36
%ile 48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.95Contig3932_atContig3932--2e-3At1g16230syntaxin-related family proteinO.I.H.G.S.X.
0.6784.70.95Contig7221_atContig7221--6e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6784.70.95Contig721_s_atContig721--2e+0At4g19095unknown proteinO.I.H.G.S.X.
0.5572.00.94HVSMEb0006M02r2_s_atHVSMEb0006M02r2--6e-1At3g22930calmodulin, putativeO.I.H.G.S.X.
0.3443.60.95Contig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1311.60.95Contig177_atContig177--3e-93At5g17310UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.897.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
4.296.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM419973Lemma_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.595.1GSM440958Control lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.595.1GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.194.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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