Co-expression analysis

Gene ID	Contig3920_at
Gene name
Homology with Arabidopsis	Similar to At5g01410: RSR4 (REDUCED SUGAR RESPONSE 4) (HF=3e-21)
Module size	7 genes
NF	0.71
%ile	91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.97	Contig3920_at	Contig3920	-	-	3e-21	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Contig3197_at	Contig3197	-	-	1e-50	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig3489_at	Contig3489	-	-	4e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig2828_at	Contig2828	-	-	2e-50	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.0	99.5	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.9	98.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.1	98.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.6	95.3	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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