Co-expression analysis

Gene ID	Contig3907_at
Gene name
Homology with Arabidopsis	Similar to At5g41340: UBC4 (UBIQUITIN CONJUGATING ENZYME 4) (HF=6e-10)
Module size	6 genes
NF	0.54
%ile	75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig3907_at	Contig3907	-	-	6e-10	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	Contig8380_at	Contig8380	-	-	5e-10	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.98	Contig2142_s_at	Contig2142	plastocyanin precursor	-	1e+0	At1g20340	DRT112	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	HV_CEa0009K20r2_at	HV_CEa0009K20r2	-	-	7e-2	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.98	Contig9506_at	Contig9506	-	-	1e-5	At2g41050	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.97	Contig2247_s_at	Contig2247	10.2 kDa photosystem I polypeptide	-	1e+0	At3g59190	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
6.0	97.9	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.0	97.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.1	96.2	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
3.3	94.6	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage