Co-expression analysis

Gene ID	Contig3900_at
Gene name
Homology with Arabidopsis	Similar to At2g27420: cysteine proteinase, putative (HF=5e-2)
Module size	26 genes
NF	0.37
%ile	50.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Contig3900_at	Contig3900	-	-	5e-2	At2g27420	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig3727_at	Contig3727	-	-	5e-66	At3g62560	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig6422_at	Contig6422	-	-	3e-1	At2g34900	IMB1 (IMBIBITION-INDUCIBLE 1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig5444_s_at	Contig5444	-	-	1e+0	At5g51210	OLEO3 (OLEOSIN3)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig12257_at	Contig12257	-	-	2e-34	At5g51070	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.96	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	HW03D07u_s_at	HW03D07u	-	-	8e-1	At3g52230	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	HZ49P22r_s_at	HZ49P22r	-	-	9e-1	At5g42825	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig5351_at	Contig5351	-	-	2e-1	At1g48450	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	HVSMEl0020O13r2_s_at	HVSMEl0020O13r2	-	-	9e+0	At5g17150	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig4591_at	Contig4591	-	-	4e-2	At4g22890	PGR5-LIKE A	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	HK06B02r_s_at	HK06B02r	-	-	1e-5	At3g43810	CAM7 (CALMODULIN 7)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	HT07O19u_s_at	HT07O19u	-	-	2e+0	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	HV_CEa0008A14r2_s_at	HV_CEa0008A14r2	-	-	2e+0	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig4091_at	Contig4091	-	-	3e-13	At1g47128	RD21 (responsive to dehydration 21)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	rbah61h03_x_at	rbah61h03	-	-	5e-61	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig23565_at	Contig23565	-	-	2e+0	At4g14819	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig5540_at	Contig5540	-	-	1e-52	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig8846_at	Contig8846	-	-	1e-8	At5g06130	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.97	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig2830_at	Contig2830	-	-	2e-4	At5g22920	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig16123_at	Contig16123	-	-	2e-1	At5g07130	LAC13 (laccase 13)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig9554_s_at	Contig9554	-	-	8e-8	At4g01560	MEE49 (maternal effect embryo arrest 49)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.1	89.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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