Co-expression analysis

Gene ID	Contig3873_at
Gene name
Homology with Arabidopsis	Similar to At1g01060: LHY (LATE ELONGATED HYPOCOTYL) (HF=3e-20)
Module size	6 genes
NF	0.67
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	62.2	0.97	Contig3873_at	Contig3873	-	-	3e-20	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	Contig2821_at	Contig2821	-	-	1e-72	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.98	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	HX03D08u_s_at	HX03D08u	-	-	6e-1	At1g04960	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.2	98.0	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.2	98.0	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.2	98.0	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.8	97.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.6	97.7	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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