Co-expression analysis

Gene ID	Contig3870_at
Gene name
Homology with Arabidopsis	Similar to At5g20570: RBX1 (RING-BOX 1) (HF=4e-44)
Module size	6 genes
NF	0.77
%ile	95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.85	Contig3870_at	Contig3870	-	-	4e-44	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.83	Contig6585_at	Contig6585	-	-	1e-8	At5g58620	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.76	Contig1516_s_at	Contig1516	-	-	3e-72	At5g62700	TUB3	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.86	Contig7389_at	Contig7389	-	-	1e-2	At3g26180	CYP71B20	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.85	Contig13485_s_at	Contig13485	-	-	4e+0	At5g35631	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.83	Contig10884_at	Contig10884	-	-	3e-3	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.1	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
4.8	97.0	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM71150	OWB-R unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.8	95.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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