Co-expression analysis

Gene ID Contig3855_at
Gene name
Homology with ArabidopsisSimilar to At2g21100: disease resistance-responsive protein-related / dirigent protein-related (HF=6e-2)
Module size 8 genes
NF 0.23
%ile 28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5268.30.90Contig3855_atContig3855--6e-2At2g21100disease resistance-responsive protein-related / dirigent protein-relatedO.I.H.G.S.X.
0.3849.50.94Contig16370_atContig16370--3e-8At5g45740unknown proteinO.I.H.G.S.X.
0.3849.50.94HM04D16u_s_atHM04D16u--3e+0At5g10400histone H3O.I.H.G.S.X.
0.3138.60.93Contig20590_atContig20590--1e+0At3g52520unknown proteinO.I.H.G.S.X.
0.3138.60.94Contig19751_atContig19751--5e+0At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.1919.60.93Contig9099_atContig9099--3e-3At4g26080ABI1 (ABA INSENSITIVE 1)O.I.H.G.S.X.
0.1919.60.94Contig2202_atContig2202--2e-10At5g18410PIR121O.I.H.G.S.X.
0.097.40.94Contig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5066.90.91Contig15590_atContig15590--1e+1At4g02250invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4661.00.91Contig1058_x_atContig1058--4e-31At4g02890UBQ14O.I.H.G.S.X.
0.4053.10.85Contig250_atContig250--6e-27At5g59690histone H4O.I.H.G.S.X.
0.4053.10.90Contig14900_atContig14900--2e-24At1g53490DNA bindingO.I.H.G.S.X.
0.4053.10.92HS08N07u_atHS08N07u--3e-1At1g03820unknown proteinO.I.H.G.S.X.
0.3545.10.90Contig16674_atContig16674--4e-1At5g40770ATPHB3 (PROHIBITIN 3)O.I.H.G.S.X.
0.3342.60.85rbags36i03_s_atrbags36i03--5e+0At5g51700PBS2 (PPHB SUSCEPTIBLE 2)O.I.H.G.S.X.
0.3342.60.90Contig7852_atContig7852--5e-11At2g20580RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)O.I.H.G.S.X.
0.3342.60.93Contig10213_x_atContig10213--3e+0At4g00120IND (INDEHISCENT)O.I.H.G.S.X.
0.3240.30.84Contig12473_atContig12473--7e-1At3g50040unknown proteinO.I.H.G.S.X.
0.3138.60.88Contig4073_atContig4073--4e-11At4g21570unknown proteinO.I.H.G.S.X.
0.3138.60.91Contig7853_atContig7853--2e-1At2g35850unknown proteinO.I.H.G.S.X.
0.3138.60.93Contig24823_atContig24823--4e-1At2g28810Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.3138.60.95Contig15845_s_atContig15845--2e-2At5g66400RAB18 (RESPONSIVE TO ABA 18)O.I.H.G.S.X.
0.3138.60.95Contig17534_atContig17534--1e-5At4g01040glycosyl hydrolase family 18 proteinO.I.H.G.S.X.
0.3037.00.87Contig13866_atContig13866--6e-2At3g24780-O.I.H.G.S.X.
0.2732.10.89Contig11609_atContig11609--7e-1At1g56320unknown proteinO.I.H.G.S.X.
0.2732.10.91Contig14579_s_atContig14579--5e-2At1g78480prenyltransferase/squalene oxidase repeat-containing proteinO.I.H.G.S.X.
0.2528.90.93Contig3932_atContig3932--2e-3At1g16230syntaxin-related family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.499.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
12.999.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
11.899.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.098.7GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.398.1GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.298.0GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.597.6GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.596.7GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage