Co-expression analysis

Gene ID Contig3855_at
Gene name
Homology with ArabidopsisSimilar to At2g21100: disease resistance-responsive protein-related / dirigent protein-related (HF=6e-2)
Module size 8 genes
NF 0.23
%ile 28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5268.30.90Contig3855_atContig3855--6e-2At2g21100disease resistance-responsive protein-related / dirigent protein-relatedO.I.H.G.S.X.
0.3849.50.94Contig16370_atContig16370--3e-8At5g45740unknown proteinO.I.H.G.S.X.
0.3849.50.94HM04D16u_s_atHM04D16u--3e+0At5g10400histone H3O.I.H.G.S.X.
0.3138.60.93Contig20590_atContig20590--1e+0At3g52520unknown proteinO.I.H.G.S.X.
0.3138.60.94Contig19751_atContig19751--5e+0At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.1919.60.93Contig9099_atContig9099--3e-3At4g26080ABI1 (ABA INSENSITIVE 1)O.I.H.G.S.X.
0.1919.60.94Contig2202_atContig2202--2e-10At5g18410PIR121O.I.H.G.S.X.
0.097.40.94Contig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.499.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
12.999.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
11.899.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.098.7GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.398.1GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.298.0GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.597.6GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.596.7GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL1458Contig1_s_at, orthologous to the query gene, Contig3855_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.6PsAffx.CL1458Contig1_s_atAt2g21100--1e+0At1g05450protease inhibitor/seed storage/lipid transfer protein (LTP)-relatedO.I.H.G.S.X.
0.3853.3PsAffx.CL2Contig24_atAt2g21100--4e-1At5g41660unknown proteinO.I.H.G.S.X.
0.3346.1PsAffx.CL1430Contig1_atAt2g21100--1e-3At3g06870proline-rich family proteinO.I.H.G.S.X.
0.2839.0PsAffx.CL864Contig1_atAt2g21100--6e+0At1g26665-O.I.H.G.S.X.
0.2532.6PsAffx.CL242Contig1_atAt2g21100--6e+0At2g42820HVA22F (HVA22-LIKE PROTEIN F)O.I.H.G.S.X.
0.2532.6PsAffx.CL2361Contig1_s_atAt2g21100--4e+0At3g5374060S ribosomal protein L36 (RPL36B)O.I.H.G.S.X.
0.2228.1GmaAffx.39950.1.S1_s_atAt2g21100--3e+0At2g44770phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.2228.1PsAffx.C65000078_atAt2g21100--1e+0At1g64400long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeO.I.H.G.S.X.
0.1114.2PsAffx.C55000025_s_atAt2g21100--5e-1At3g10400RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.0912.0PsAffx.C39000016_s_atAt2g21100--3e+0At4g31760peroxidase, putativeO.I.H.G.S.X.
0.0811.0PsAffx.psMA004xG14f_atAt2g21100--5e+0At5g61540L-asparaginase, putative / L-asparagine amidohydrolase, putativeO.I.H.G.S.X.
0.069.0PsAffx.CL404Contig1_atAt2g21100--6e-3At2g47470UNE5 (UNFERTILIZED EMBRYO SAC 5)O.I.H.G.S.X.
0.058.0PsAffx.CL1220Contig1_s_atAt2g21100--2e+1At5g15310ATMYB16 (MYB DOMAIN PROTEIN 16)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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