Co-expression analysis

Gene ID	Contig3847_at
Gene name
Homology with Arabidopsis	Similar to At3g26935: zinc finger (DHHC type) family protein (HF=4e-9)
Module size	35 genes
NF	0.36
%ile	49.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	0.94	Contig3847_at	Contig3847	-	-	4e-9	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.94	Contig2856_s_at	Contig2856	-	-	4e+0	At4g21902	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig2832_s_at	Contig2832	-	-	6e+0	At4g36530	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig6910_at	Contig6910	-	-	9e-4	At5g43590	patatin, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	HA26O09r_s_at	HA26O09r	-	-	6e+0	At3g52780	PAP20	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig10536_at	Contig10536	-	-	3e-2	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig5244_at	Contig5244	-	-	1e-37	At5g53460	GLT1	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig6968_at	Contig6968	-	-	8e-19	At3g22830	AT-HSFA6B	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig2846_at	Contig2846	-	-	3e-5	At2g27285	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig13821_at	Contig13821	-	-	5e-4	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig17100_at	Contig17100	-	-	2e+0	At3g52800	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig3263_at	Contig3263	-	-	9e-38	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig7844_at	Contig7844	-	-	3e-1	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig8382_at	Contig8382	-	-	3e-2	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig3403_s_at	Contig3403	-	-	2e-2	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig6203_at	Contig6203	-	-	1e-3	At1g70110	lectin protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig3622_s_at	Contig3622	aleurone specific protein	-	2e-2	At3g46900	COPT2	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig5290_at	Contig5290	defender against death (dad) 1	-	7e-15	At2g35520	DAD2 (DEFENDER AGAINST CELL DEATH 2)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig5871_at	Contig5871	-	-	2e+0	At2g38860	YLS5	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig694_at	Contig694	-	-	5e-6	At1g32900	starch synthase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig8886_at	Contig8886	-	-	8e-18	At1g63660	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig15424_at	Contig15424	-	-	2e+1	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig3410_at	Contig3410	-	-	3e+0	At5g65260	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig11017_at	Contig11017	-	-	1e+0	At1g15840	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig8718_at	Contig8718	-	-	7e+0	Atmg00150	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig4131_at	Contig4131	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig8853_at	Contig8853	-	-	1e-1	At1g19360	-	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig17728_at	Contig17728	-	-	2e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.1	89.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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