Co-expression analysis

Gene ID	Contig3842_s_at
Gene name
Homology with Arabidopsis	Similar to At1g01470: LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) (HF=1e-3)
Module size	8 genes
NF	0.13
%ile	15.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.79	Contig3842_s_at	Contig3842	-	-	1e-3	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.86	Contig2282_at	Contig2282	-	-	3e+0	At1g24050	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.87	HT01D22w_at	HT01D22w	-	-	1e+0	At3g17500	F-box family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.85	Contig4995_at	Contig4995	-	-	2e-1	At2g26290	ARSK1 (root-specific kinase 1)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.81	Contig13832_at	Contig13832	-	-	8e+0	At5g40981	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.85	Contig7804_at	Contig7804	-	-	3e-25	At2g44900	armadillo/beta-catenin repeat family protein / F-box family protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.81	Contig16608_at	Contig16608	-	-	3e-1	At5g06960	OBF5 (OCS-ELEMENT BINDING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.81	Contig3844_at	Contig3844	-	-	5e-47	At4g02080	ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM71149	OWB-R unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.8	99.1	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.8	99.1	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.7	99.0	GSM71148	OWB-R unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.6	99.0	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.1	98.9	GSM71150	OWB-R unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.5	98.2	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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