Co-expression analysis

Gene ID Contig383_at
Gene name
Homology with ArabidopsisSimilar to At1g79040: PSBR (photosystem II subunit R) (HF=2e-2)
Module size 7 genes
NF 0.23
%ile 28.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.94Contig383_atContig383--2e-2At1g79040PSBR (photosystem II subunit R)O.I.H.G.S.X.
0.4458.90.95Contig16299_atContig16299--2e+0At3g55960NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.3647.10.95Contig11245_atContig11245--1e-1At1g34780ATAPRL4 (APR-like 4)O.I.H.G.S.X.
0.3342.60.96Contig13507_atContig13507--2e+0At4g24370unknown proteinO.I.H.G.S.X.
0.2122.60.95Contig8538_atContig8538--4e-2At2g04038AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)O.I.H.G.S.X.
0.1514.10.95Contig17594_atContig17594--2e+0At4g11300unknown proteinO.I.H.G.S.X.
0.108.40.94Contig13522_atContig13522--4e-17At4g02630protein kinase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.799.6GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
12.799.4GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.499.2GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
4.696.8GSM261037Dicktoo-subzero-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
4.296.3GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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