Co-expression analysis

Gene ID Contig3836_at
Gene name
Homology with ArabidopsisSimilar to At1g27540: F-box family protein (HF=9e-3)
Module size 7 genes
NF 0.65
%ile 86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.88Contig3836_atContig3836--9e-3At1g27540F-box family proteinO.I.H.G.S.X.
0.8394.00.90Contig16253_atContig16253--7e+0At5g48515-O.I.H.G.S.X.
0.6178.70.90Contig11287_s_atContig11287--1e+0At5g15960KIN1O.I.H.G.S.X.
0.5975.80.89Contig8340_atContig8340--8e-3At2g41190amino acid transporter family proteinO.I.H.G.S.X.
0.5572.00.90Contig8790_atContig8790--8e-17At5g02800protein kinase family proteinO.I.H.G.S.X.
0.5369.70.89Contig10972_atContig10972--1e-5At1g32500ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)O.I.H.G.S.X.
0.5369.70.91Contig20219_atContig20219--1e-2At3g24770CLE41 (CLAVATA3/ESR-RELATED 41)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.9GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.597.6GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.597.6GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
5.097.2GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.997.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.496.6GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.496.6GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.995.8GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.895.7GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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