Co-expression analysis

Gene ID	Contig3835_s_at
Gene name
Homology with Arabidopsis	Similar to At5g25560: zinc finger (C3HC4-type RING finger) family protein (HF=9e-20)
Module size	22 genes
NF	0.18
%ile	22.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	0.80	Contig3835_s_at	Contig3835	-	-	9e-20	At5g25560	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.89	Contig6135_s_at	Contig6135	-	-	4e-1	At5g16150	PGLCT (PLASTIDIC GLC TRANSLOCATOR)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.87	Contig6362_s_at	Contig6362	-	-	3e-1	At1g35340	ATP-dependent protease La (LON) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.86	HV06P16u_s_at	HV06P16u	-	-	4e+0	At5g42797	LCR28 (Low-molecular-weight cysteine-rich 28)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.90	HY10D11u_at	HY10D11u	-	-	4e+0	At1g71030	MYBL2 (ARABIDOPSIS MYB-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.85	Contig23198_at	Contig23198	-	-	1e+0	At5g52730	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.90	Contig6135_at	Contig6135	-	-	4e-1	At5g16150	PGLCT (PLASTIDIC GLC TRANSLOCATOR)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.90	Contig14053_at	Contig14053	-	-	3e-1	At2g45760	BAP2 (BON ASSOCIATION PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.90	Contig6674_at	Contig6674	-	-	7e-20	At4g30810	scpl29 (serine carboxypeptidase-like 29)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.90	HO14K20S_at	HO14K20S	-	-	8e-1	At2g16930	ribosomal protein L27 family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.92	Contig20465_at	Contig20465	-	-	2e-8	At4g29680	type I phosphodiesterase/nucleotide pyrophosphatase family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.88	EBro03_SQ008_J07_s_at	EBro03_SQ008_J07	-	-	8e-1	At5g19240	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.88	Contig13919_at	Contig13919	-	-	7e-1	At5g36940	CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.85	Contig10109_at	Contig10109	-	-	3e-2	At4g12710	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.89	HVSMEb0008C20r2_x_at	HVSMEb0008C20r2	-	-	4e+0	At5g02360	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.90	Contig3802_at	Contig3802	-	-	3e-76	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.91	Contig5744_at	Contig5744	-	-	1e-7	At2g40600	appr-1-p processing enzyme family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.84	Contig24362_at	Contig24362	-	-	2e+0	At3g12630	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.87	Contig24253_at	Contig24253	-	-	4e+0	At4g25433	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.86	Contig9107_at	Contig9107	-	-	1e-7	At3g22845	emp24/gp25L/p24 protein-related	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.87	MitoContig7_at	MitoContig7	-	-	7e-117	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.88	rbags15a06_at	rbags15a06	-	-	3e-1	At3g49980	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.5	95.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.5	95.1	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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