Co-expression analysis

Gene ID	Contig3831_at
Gene name
Homology with Arabidopsis	Similar to At4g18960: AG (AGAMOUS) (HF=3e-15)
Module size	6 genes
NF	0.16
%ile	19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.86	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.88	Contig15823_at	Contig15823	-	-	1e-1	At1g52315	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.86	Contig8396_at	Contig8396	-	-	6e+0	At3g20910	NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.88	Contig10035_at	Contig10035	-	-	5e+0	Atmg00070	-	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.86	Contig1488_at	Contig1488	-	-	8e-1	At5g39320	UDP-glucose 6-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.88	Contig10518_at	Contig10518	-	-	2e-5	At1g16870	mitochondrial 28S ribosomal protein S29-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.5	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
17.4	99.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
12.0	99.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.6	99.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.3	99.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
9.5	99.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7	98.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.3	98.1	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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