Co-expression analysis

Gene ID Contig3831_at
Gene name
Homology with ArabidopsisSimilar to At4g18960: AG (AGAMOUS) (HF=3e-15)
Module size 6 genes
NF 0.16
%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4863.20.86Contig3831_atContig3831--3e-15At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.5066.90.88Contig15823_atContig15823--1e-1At1g52315unknown proteinO.I.H.G.S.X.
0.3037.00.86Contig8396_atContig8396--6e+0At3g20910NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9)O.I.H.G.S.X.
0.2935.50.88Contig10035_atContig10035--5e+0Atmg00070-O.I.H.G.S.X.
0.097.40.86Contig1488_atContig1488--8e-1At5g39320UDP-glucose 6-dehydrogenase, putativeO.I.H.G.S.X.
0.064.80.88Contig10518_atContig10518--2e-5At1g16870mitochondrial 28S ribosomal protein S29-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.599.7GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
17.499.6GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
12.099.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.699.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.399.3GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
9.599.0GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.098.9GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.798.6GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
6.798.3GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
6.398.1GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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