Co-expression analysis

Gene ID	Contig3816_s_at
Gene name
Homology with Arabidopsis	Similar to At1g09430: ACLA-3 (HF=3e-65)
Module size	9 genes
NF	0.43
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	55.2	0.81	Contig3816_s_at	Contig3816	-	-	3e-65	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.84	Contig10523_at	Contig10523	-	-	2e-5	At5g01400	ESP4 (ENHANCED SILENCING PHENOTYPE 4)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.87	Contig14721_at	Contig14721	-	-	5e+0	At4g15670	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.86	rbaal31j11_s_at	rbaal31j11	-	-	1e+0	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig10808_at	Contig10808	-	-	6e+0	At5g18362	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.86	Contig9101_s_at	Contig9101	-	-	7e+0	At5g23930	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.86	rbaal41j07_at	rbaal41j07	-	-	4e+0	At3g27999	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.87	Contig17628_at	Contig17628	-	-	8e-1	At1g05960	binding	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.86	Contig5239_at	Contig5239	-	-	1e-9	At5g26120	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.5	99.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.8	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.8	95.7	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.8	95.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
3.7	95.5	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.3	94.6	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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