Co-expression analysis

Gene ID	Contig3812_at
Gene name
Homology with Arabidopsis	Similar to At1g09350: AtGolS3 (Arabidopsis thaliana galactinol synthase 3) (HF=2e-19)
Module size	6 genes
NF	0.31
%ile	40.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.84	Contig3812_at	Contig3812	-	-	2e-19	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.87	Contig3811_at	Contig3811	-	-	4e-24	At1g56600	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig13032_at	Contig13032	-	-	5e-8	At3g61570	GDAP1 (GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.87	Contig13030_s_at	Contig13030	-	-	3e-8	At5g06530	ABC transporter family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.84	EBem09_SQ007_D05_s_at	EBem09_SQ007_D05	-	-	2e+0	At3g61810	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.83	Contig7874_at	Contig7874	-	-	7e-3	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	99.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.2	99.4	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.0	99.2	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.3	99.0	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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