Co-expression analysis

Gene ID	Contig3810_s_at
Gene name
Homology with Arabidopsis	Similar to At1g09350: AtGolS3 (Arabidopsis thaliana galactinol synthase 3) (HF=3e-18)
Module size	11 genes
NF	0.78
%ile	95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.88	Contig3810_s_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.88	HT03K14r_s_at	HT03K14r	-	-	2e-1	At5g02060	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.90	HU02F20u_s_at	HU02F20u	-	-	2e-5	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.89	Contig3755_at	Contig3755	-	-	5e-1	At4g01265	raffinose synthase family protein / seed imbibition protein-related	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.91	Contig17632_at	Contig17632	-	-	2e+0	At4g11655	transmembrane protein, putative	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.92	Contig3235_s_at	Contig3235	-	-	9e-29	At2g44160	MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.89	Contig13532_at	Contig13532	-	-	7e-3	At3g19950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.90	Contig1432_at	Contig1432	-	-	4e+0	At1g80340	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.89	Contig3775_s_at	Contig3775	-	-	5e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.88	HT11E22u_x_at	HT11E22u	-	-	3e+0	At1g14420	AT59	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.89	Contig3235_at	Contig3235	-	-	9e-29	At2g44160	MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	99.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.1	99.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.8	98.9	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.3	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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