Co-expression analysis

Gene ID	Contig3806_s_at
Gene name
Homology with Arabidopsis	Similar to At2g43710: SSI2 (HF=1e-3)
Module size	7 genes
NF	0.65
%ile	87.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.97	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.97	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	Contig12375_at	Contig12375	-	-	1e-4	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig6337_at	Contig6337	-	-	2e+0	At3g10640	VPS60.1	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig9509_at	Contig9509	-	-	7e-1	At3g23980	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig6082_at	Contig6082	-	-	2e+0	At3g52760	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig2821_at	Contig2821	-	-	1e-72	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.7	92.7	GSM372952	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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