Co-expression analysis

Gene ID Contig3794_at
Gene name
Homology with ArabidopsisSimilar to At1g16890: ubiquitin-conjugating enzyme, putative (HF=7e-31)
Module size 6 genes
NF 0.77
%ile 95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.97Contig3794_atContig3794--7e-31At1g16890ubiquitin-conjugating enzyme, putativeO.I.H.G.S.X.
0.8394.00.97Contig4302_atContig4302--8e-2At5g48640cyclin family proteinO.I.H.G.S.X.
0.7790.80.97Contig4563_atContig4563--5e-15At3g17240mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)O.I.H.G.S.X.
0.6178.70.97Contig5778_atContig5778--2e-10At4g22260IM (IMMUTANS)O.I.H.G.S.X.
0.5066.90.98Contig2986_atContig2986--1e-39At3g28710H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.491.4GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
2.491.4GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.491.4GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.390.9GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
2.390.9GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
2.390.9GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
2.390.9GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.290.3GSM261039Dicktoo-deacclimation-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.290.3GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.189.7GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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