Co-expression analysis

Gene ID	Contig3746_at
Gene name
Homology with Arabidopsis	Similar to At4g18335: unknown protein (HF=1e-1)
Module size	24 genes
NF	0.33
%ile	43.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	0.90	Contig3746_at	Contig3746	-	-	1e-1	At4g18335	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	Contig11039_at	Contig11039	multiple inositol polyphosphate phosphatase PhyIIa2	-	4e-3	At1g09870	histidine acid phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.93	Contig6269_at	Contig6269	-	-	1e+1	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	Contig13085_at	Contig13085	-	-	8e-10	At1g73920	lipase family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.91	rbags1k21_s_at	rbags1k21	-	-	1e+0	Atmg00940	-	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.92	Contig8159_at	Contig8159	-	-	4e-21	At1g08490	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.91	EBma03_SQ003_L08_at	EBma03_SQ003_L08	-	-	4e-1	At3g57590	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig6248_at	Contig6248	-	-	2e-67	At5g47010	LBA1 (LOW-LEVEL BETA-AMYLASE 1)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig8580_s_at	Contig8580	-	-	5e-2	At5g20670	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.92	HV12C23u_x_at	HV12C23u	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	Contig7391_at	Contig7391	-	-	2e-25	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.91	basd0c03_s_at	basd0c03	-	-	3e+0	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig418_at	Contig418	-	-	4e-29	At2g34430	LHB1B1	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.92	Contig2924_s_at	Contig2924	-	-	9e-1	At5g16550	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig9242_at	Contig9242	-	-	4e-18	At3g06430	EMB2750 (embryo defective 2750)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig12886_at	Contig12886	-	-	7e-8	At1g71410	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	HI11M05r_s_at	HI11M05r	-	-	5e-2	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig13529_at	Contig13529	-	-	3e+0	At3g18470	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig5973_at	Contig5973	-	-	4e-1	At5g28615	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.92	HO11E24S_s_at	HO11E24S	-	-	6e-1	At5g03590	GDSL-motif lipase/hydrolase protein-related	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig6456_s_at	Contig6456	-	-	4e+0	At3g16120	dynein light chain, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig7554_s_at	Contig7554	-	-	2e-9	At2g31440	protein binding	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.92	Contig477_at	Contig477	-	-	1e+0	At4g10970	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.91	Contig20361_at	Contig20361	-	-	1e+0	At5g48560	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	95.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.1	94.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.5	91.9	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
2.5	91.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.5	91.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.3	90.9	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.1	89.7	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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