Co-expression analysis

Gene ID	Contig3711_at
Gene name
Homology with Arabidopsis	Similar to At1g79600: ABC1 family protein (HF=2e-26)
Module size	6 genes
NF	0.32
%ile	42.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.94	Contig3711_at	Contig3711	-	-	2e-26	At1g79600	ABC1 family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.94	Contig3710_at	Contig3710	-	-	1e-3	At4g26620	sucrase-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig3716_at	Contig3716	-	-	4e-2	At4g37110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig5341_at	Contig5341	-	-	8e-4	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig4506_at	Contig4506	-	-	6e+0	At4g02725	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig171_at	Contig171	-	-	6e-3	At1g19730	ATTRX4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	99.3	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.3	99.1	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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