Co-expression analysis

Gene ID Contig3685_at
Gene name
Homology with ArabidopsisSimilar to At5g18970: AWPM-19-like membrane family protein (HF=8e+0)
Module size 7 genes
NF 0.22
%ile 26.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4053.10.88Contig3685_atContig3685--8e+0At5g18970AWPM-19-like membrane family proteinO.I.H.G.S.X.
0.6784.70.88Contig9729_atContig9729--3e+0At3g56580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3240.30.87Contig14020_atContig14020--4e-7At3g18170transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.2630.40.88Contig4110_s_atContig4110--5e-2At5g41400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2122.60.90Contig15918_atContig15918--2e+0At5g43285-O.I.H.G.S.X.
0.1412.90.91Contig690_s_atContig690--4e-1At1g06540unknown proteinO.I.H.G.S.X.
0.064.80.89Contig13493_atContig13493--2e-7At5g64220calmodulin-binding proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.099.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
20.499.7GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.695.3GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.194.1GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.093.8GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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