Co-expression analysis

Gene ID Contig3675_at
Gene name
Homology with ArabidopsisSimilar to At3g55500: ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) (HF=2e-10)
Module size 19 genes
NF 0.59
%ile 81.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.20.97Contig3675_atContig3675--2e-10At3g55500ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)O.I.H.G.S.X.
0.7187.10.98Contig14763_atContig14763--2e-1At2g37510RNA-binding protein, putativeO.I.H.G.S.X.
0.6985.50.98Contig23732_atContig23732--6e-1At1g05190emb2394 (embryo defective 2394)O.I.H.G.S.X.
0.6784.70.98Contig24497_atContig24497--3e+0At5g36910THI2.2 (THIONIN 2.2)O.I.H.G.S.X.
0.6784.70.98Contig20936_atContig20936--3e-5At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.
0.6581.40.98HM01F24T_s_atHM01F24T--4e-5At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.6279.10.98Contig22905_atContig22905--4e-1At2g3448060S ribosomal protein L18A (RPL18aB)O.I.H.G.S.X.
0.6178.70.97Contig2738_s_atContig2738--2e-1At4g27820BGLU9 (BETA GLUCOSIDASE 9)O.I.H.G.S.X.
0.6178.70.97Contig19492_atContig19492--5e-1At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.5874.90.97Contig26480_atContig26480--2e+0At1g62070unknown proteinO.I.H.G.S.X.
0.5874.90.98Contig21003_atContig21003--6e+0At5g17280unknown proteinO.I.H.G.S.X.
0.5774.90.97Contig14735_atContig14735--6e-6At1g12470Pep3/Vps18/deep orange family proteinO.I.H.G.S.X.
0.5774.90.98EBma03_SQ002_K01_s_atEBma03_SQ002_K01--5e+0At5g63905unknown proteinO.I.H.G.S.X.
0.5674.30.98Contig18703_atContig18703--1e+0At5g48205zinc ion bindingO.I.H.G.S.X.
0.5369.70.97HR01C15u_s_atHR01C15u--4e-12At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.
0.5066.90.97Contig19871_atContig19871--4e+0At4g11060MTSSB (mitochondrially targeted single-stranded DNA binding protein)O.I.H.G.S.X.
0.4458.90.98HY09M22u_s_atHY09M22u--3e+0At2g04378beta-galactosidaseO.I.H.G.S.X.
0.4255.20.97Contig7221_s_atContig7221--6e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4153.90.97Contig19387_atContig19387--2e-1At3g30580unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.599.5GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.998.9GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.998.7GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.898.6GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.598.2GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
6.298.0GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
5.697.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.796.9GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.396.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM261054Bonus Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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