Co-expression analysis

Gene ID	Contig3592_at
Gene name
Homology with Arabidopsis	Similar to At4g39800: MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) (HF=4e-83)
Module size	11 genes
NF	0.40
%ile	55.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.84	Contig3592_at	Contig3592	-	-	4e-83	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	HV_CEb0011B04r2_s_at	HV_CEb0011B04r2	-	-	9e+0	At5g43540	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.86	HVSMEf0006D12r2_s_at	HVSMEf0006D12r2	-	-	9e-1	At3g25160	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.90	Contig13278_at	Contig13278	-	-	8e-6	At5g07920	DGK1 (DIACYLGLYCEROL KINASE1)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.89	Contig1922_at	Contig1922	-	-	2e-62	At1g72370	P40	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.89	Contig160_s_at	Contig160	-	-	2e-20	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.91	Contig5252_at	Contig5252	-	-	2e-1	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.89	Contig10000_s_at	Contig10000	-	-	8e+0	At5g05113	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.93	Contig5571_at	Contig5571	-	-	6e-8	At2g47590	PHR2 (photolyase/blue-light receptor 2)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.89	Contig10001_at	Contig10001	-	-	9e-6	At3g01410	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.89	HV_CEb0015P21f_s_at	HV_CEb0015P21f	-	-	5e-2	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.0	97.2	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.9	97.1	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.1	96.2	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.7	95.5	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.7	95.5	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.4	94.8	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM160815	drought control rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage