CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig3558_s_at

Gene name
Homology with Arabidopsis Similar to At1g24510: T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative (HF=2e-15)

Module size 6 genes

NF 0.83

%ile 97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.0 0.97 Contig3558_s_at Contig3558 - - 2e-15 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative O.I. H.G. S.X.
0.83 94.0 0.96 Contig4143_at Contig4143 - - 5e-1 At3g06778 heat shock protein binding / unfolded protein binding O.I. H.G. S.X.
0.80 92.5 0.97 Contig21617_at Contig21617 - - 3e-1 At4g31470 pathogenesis-related protein, putative O.I. H.G. S.X.
0.80 92.5 0.97 Contig4072_at Contig4072 - - 2e+0 At2g31610 40S ribosomal protein S3 (RPS3A) O.I. H.G. S.X.
0.67 84.7 0.97 Contig30_s_at Contig30 - - 4e-19 At5g59690 histone H4 O.I. H.G. S.X.
0.55 72.0 0.97 HD13H12r_s_at HD13H12r - - 2e-1 At3g28710 H+-transporting two-sector ATPase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.8 99.1 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.0 98.4 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.8 97.8 GSM311205 28-4_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.2 97.4 GSM311261 kara_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.8 95.7 GSM130803 JA, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
3.3 94.6 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.0 93.8 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.0 93.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
2.8 93.1 GSM311260 kara_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.8742.1.A1_at, orthologous to the query gene, Contig3558_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 75.4 PtpAffx.8742.1.A1_at At1g24510 hypothetical protein - 4e-60 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative O.I. H.G. S.X.
0.55 82.2 Ptp.6828.1.A1_at At1g24510 hypothetical protein - 2e+0 At4g18975 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.50 78.6 PtpAffx.11859.1.A1_x_at At1g24510 hypothetical protein - 1e-4 At4g29480 mitochondrial ATP synthase g subunit family protein O.I. H.G. S.X.
0.46 73.7 PtpAffx.45383.2.A1_a_at At1g24510 hypothetical protein - 1e-9 At4g22000 unknown protein O.I. H.G. S.X.
0.36 61.6 PtpAffx.25022.2.S1_a_at At1g24510 hypothetical protein - 2e-31 At3g53630 unknown protein O.I. H.G. S.X.
0.22 38.3 PtpAffx.32368.1.S1_a_at At1g24510 hypothetical protein - 7e-40 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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