Co-expression analysis

Gene ID	Contig3558_s_at
Gene name
Homology with Arabidopsis	Similar to At1g24510: T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative (HF=2e-15)
Module size	6 genes
NF	0.83
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.97	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig4143_at	Contig4143	-	-	5e-1	At3g06778	heat shock protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig21617_at	Contig21617	-	-	3e-1	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.0	98.4	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.8	97.8	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.2	97.4	GSM311261	kara_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.8	95.7	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
3.3	94.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM311260	kara_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.90058.1.S1_s_at, orthologous to the query gene, Contig3558_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.9	GmaAffx.90058.1.S1_s_at	At1g24510	-	-	1e-9	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.77	90.3	Gma.6337.1.S1_x_at	At1g24510	-	-	5e-31	At4g34555	40S ribosomal protein S25, putative	O.I.	H.G.	S.X.	Please select
0.73	88.9	Gma.10357.1.S1_at	At1g24510	-	-	8e-28	At3g03960	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.1373.1.S1_a_at	At1g24510	-	-	7e-31	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.17740.1.S1_at	At1g24510	-	-	2e-61	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.3948.1.S1_at	At1g24510	-	-	2e-28	At2g46290	eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.11133.1.S1_s_at	At1g24510	-	-	2e-28	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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