Co-expression analysis

Gene ID	Contig3554_at
Gene name
Homology with Arabidopsis	Similar to At3g48890: ATMP2 (HF=6e-13)
Module size	6 genes
NF	0.48
%ile	66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.89	Contig3554_at	Contig3554	-	-	6e-13	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.87	Contig11254_at	Contig11254	-	-	3e+0	At5g63085	-	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.86	Contig22013_at	Contig22013	-	-	1e-1	At3g48185	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.86	Contig2477_s_at	Contig2477	-	-	1e-3	At3g20660	AtOCT4 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig3552_at	Contig3552	-	-	7e-1	At4g29273	LCR23 (Low-molecular-weight cysteine-rich 23)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.87	Contig5763_s_at	Contig5763	C-8,7-sterol isomerase	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.0	99.8	GSM71153	Barke stress and unstress replicate 4	GSE3170	Barley single feature polymorphisms and drought stress gene expression
14.4	99.5	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
12.3	99.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.2	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.0	99.1	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
8.5	98.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
8.2	98.7	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.9	98.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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