Co-expression analysis

Gene ID Contig3527_at
Gene name
Homology with ArabidopsisSimilar to At5g19990: RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) (HF=4e-169)
Module size 7 genes
NF 0.46
%ile 63.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.94Contig3527_atContig3527--4e-169At5g19990RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)O.I.H.G.S.X.
0.5774.90.93Contig3707_s_atContig3707--1e-23At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.4458.90.95Contig2761_atContig2761--2e+0At5g40550unknown proteinO.I.H.G.S.X.
0.4053.10.94Contig5782_atContig5782--9e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.4053.10.94Contig4899_s_atContig4899--2e-2At2g01140fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.4053.10.94Contig6931_atContig6931--8e-1At2g04480unknown proteinO.I.H.G.S.X.
0.2326.10.94Contig16318_atContig16318--7e-2At3g56790RNA splicing factor-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.296.3GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.196.2GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.096.0GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM146374Golden Promise shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM238439Embryo 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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