Co-expression analysis

Gene ID Contig3520_at
Gene name
Homology with ArabidopsisSimilar to At1g23800: ALDH2B7 (HF=1e-21)
Module size 6 genes
NF 0.66
%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig3520_atContig3520--1e-21At1g23800ALDH2B7O.I.H.G.S.X.
0.8394.00.97Contig3227_atContig3227--9e-5At1g64750ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))O.I.H.G.S.X.
0.6784.70.98Contig16042_atContig16042--3e-5At1g76900AtTLP1 (TUBBY LIKE PROTEIN 1)O.I.H.G.S.X.
0.6077.30.98Contig18887_atContig18887--3e-8At3g56210bindingO.I.H.G.S.X.
0.5572.00.98Contig18153_atContig18153--4e+0At5g63440unknown proteinO.I.H.G.S.X.
0.3545.10.98Contig20224_atContig20224--7e-3At1g14690MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.599.5GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
10.499.2GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
9.499.0GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
7.698.6GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.398.5GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.198.4GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
6.898.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
6.698.2GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.997.9GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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