Co-expression analysis

Gene ID	Contig3476_at
Gene name
Homology with Arabidopsis	Similar to At5g66760: SDH1-1 (HF=2e-169)
Module size	6 genes
NF	0.26
%ile	33.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.93	Contig3476_at	Contig3476	-	-	2e-169	At5g66760	SDH1-1	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	HVSMEm0006I15r2_at	HVSMEm0006I15r2	-	-	1e+0	At5g27670	HTA7 (HISTONE H2A 7)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	rbags17a06_s_at	rbags17a06	-	-	1e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.93	Contig680_at	Contig680	-	-	1e-99	At4g30190	AHA2	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig18246_at	Contig18246	-	-	2e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	99.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.6	99.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.6	99.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.7	98.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1	98.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.2	97.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6	96.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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