Co-expression analysis

Gene ID Contig3462_at
Gene name
Homology with ArabidopsisSimilar to At3g46460: UBC13 (ubiquitin-conjugating enzyme 13) (HF=5e-35)
Module size 6 genes
NF 0.09
%ile 11.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.00.89Contig3462_atContig3462--5e-35At3g46460UBC13 (ubiquitin-conjugating enzyme 13)O.I.H.G.S.X.
0.6178.70.89Contig3461_atContig3461--2e-5At5g63030glutaredoxin, putativeO.I.H.G.S.X.
0.2935.50.92Contig7423_atContig7423--1e-8At5g02080DNA/panthothenate metabolism flavoprotein family proteinO.I.H.G.S.X.
0.1818.20.93Contig4875_atContig4875--1e-2At2g47700zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.064.80.91Contig10311_atContig10311--1e-8At3g09890ankyrin repeat family proteinO.I.H.G.S.X.
0.032.60.90Contig10867_atContig10867--9e-35At3g20560ATPDIL5-3 (PDI-LIKE 5-3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.299.7GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
17.999.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.898.9GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.998.7GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
7.998.7GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.998.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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