Co-expression analysis

Gene ID Contig3413_s_at
Gene name
Homology with ArabidopsisSimilar to At3g27470: unknown protein (HF=5e-28)
Module size 7 genes
NF 0.16
%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.91Contig3413_s_atContig3413--5e-28At3g27470unknown proteinO.I.H.G.S.X.
0.5066.90.92Contig17164_atContig17164--7e-1At5g28050cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.3545.10.92Contig3074_atContig3074--6e+0At3g52090NRPB11O.I.H.G.S.X.
0.1311.60.92Contig3070_atContig3070--8e+0At5g13260unknown proteinO.I.H.G.S.X.
0.119.40.92Contig23961_atContig23961--3e-1At4g14450unknown proteinO.I.H.G.S.X.
0.097.40.92Contig9311_atContig9311--5e+0At5g01880zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.043.40.92HB26D17r_x_atHB26D17r--3e+0At5g38180protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.498.1GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
6.398.1GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
6.198.0GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.897.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.097.2GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.897.0GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.796.9GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.596.7GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.6729.1.S1_at, orthologous to the query gene, Contig3413_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8696.3Zm.6729.1.S1_atAt3g27470hypothetical protein LOC100273464 /// lysine ketoglutarate reductase trans-splicing related 1-6e-34At1g67850unknown proteinO.I.H.G.S.X.
0.7490.3Zm.1544.1.A1_a_atAt3g27470herbicide safener binding protein1-3e+0At4g21190emb1417 (embryo defective 1417)O.I.H.G.S.X.
0.6785.8Zm.16214.1.A1_atAt3g27470--2e-1At3g04890unknown proteinO.I.H.G.S.X.
0.6381.1Zm.5081.1.S1_atAt3g27470hypothetical protein LOC100274512-5e-42At1g10940SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)O.I.H.G.S.X.
0.5875.1Zm.4970.1.A1_atAt3g27470NAD-dependent dyhydrogenase, Gfo/Idh/MocA family-9e-5At3g20790oxidoreductase family proteinO.I.H.G.S.X.
0.5674.4Zm.5645.1.A1_atAt3g27470--2e-6At5g24710-O.I.H.G.S.X.
0.5469.8Zm.14689.1.S1_atAt3g27470hypothetical protein LOC100277287-7e-7At2g43180catalyticO.I.H.G.S.X.
0.5369.1Zm.13962.1.S1_atAt3g27470334B7.2 protein-9e-3At2g15860unknown proteinO.I.H.G.S.X.
0.5166.4Zm.10346.2.A1_a_atAt3g27470--2e+0At4g33690unknown proteinO.I.H.G.S.X.
0.5166.4Zm.1855.1.A1_atAt3g27470--5e-2At2g03230-O.I.H.G.S.X.
0.4961.9Zm.5578.2.S1_a_atAt3g27470hypothetical protein LOC100193656-1e-4At5g48335unknown proteinO.I.H.G.S.X.
0.4556.4Zm.9082.2.S1_atAt3g27470--3e-10At2g25070protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.4352.8Zm.4743.1.S1_atAt3g27470--7e+0At5g28463unknown proteinO.I.H.G.S.X.
0.4251.3Zm.529.1.A1_atAt3g27470homocysteine S-methyltransferase-2-6e-5At3g63250HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.4149.7Zm.11944.1.A1_atAt3g27470transcription factor RF2b-3e-3At1g43700VIP1 (VIRE2-INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.3336.0Zm.8232.1.A1_atAt3g27470hypothetical protein LOC100191804-4e-1At1g02405proline-rich family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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