Co-expression analysis

Gene ID Contig3413_s_at
Gene name
Homology with ArabidopsisSimilar to At3g27470: unknown protein (HF=5e-28)
Module size 7 genes
NF 0.16
%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.91Contig3413_s_atContig3413--5e-28At3g27470unknown proteinO.I.H.G.S.X.
0.5066.90.92Contig17164_atContig17164--7e-1At5g28050cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.3545.10.92Contig3074_atContig3074--6e+0At3g52090NRPB11O.I.H.G.S.X.
0.1311.60.92Contig3070_atContig3070--8e+0At5g13260unknown proteinO.I.H.G.S.X.
0.119.40.92Contig23961_atContig23961--3e-1At4g14450unknown proteinO.I.H.G.S.X.
0.097.40.92Contig9311_atContig9311--5e+0At5g01880zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.043.40.92HB26D17r_x_atHB26D17r--3e+0At5g38180protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.498.1GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
6.398.1GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
6.198.0GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.897.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.097.2GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.897.0GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.796.9GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.596.7GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0910400, orthologous to the query gene, Contig3413_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os01g0910400At3g27470-Protein of unknown function DUF707 family protein3e-22At2g28310unknown proteinO.I.H.G.S.X.
0.6079.7Os10g0123200At3g27470-Cyclin-like F-box domain containing protein2e-1At4g39750F-box family protein-relatedO.I.H.G.S.X.
0.4458.1Os10g0396100At3g27470-Cyclin-like F-box domain containing protein7e-1At5g18440unknown proteinO.I.H.G.S.X.
0.094.9Os05g0483000At3g27470--2e+0At5g0261060S ribosomal protein L35 (RPL35D)O.I.H.G.S.X.
0.031.4Os02g0299600At3g27470-Protein of unknown function DUF1242 family protein1e-3At5g20165unknown proteinO.I.H.G.S.X.
0.031.4Os08g0539200At3g27470-Conserved hypothetical protein2e+0At3g22820allergen-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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