Co-expression analysis

Gene ID Contig3408_at
Gene name
Homology with ArabidopsisSimilar to At3g27430: PBB1 (HF=1e-26)
Module size 9 genes
NF 0.73
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.97Contig3408_atContig3408--1e-26At3g27430PBB1O.I.H.G.S.X.
0.9498.90.98Contig14871_atContig14871--2e+0At5g41614unknown proteinO.I.H.G.S.X.
0.8092.50.98Contig23438_atContig23438--2e+0At1g5786060S ribosomal protein L21O.I.H.G.S.X.
0.7589.50.99Contig19788_atContig19788--3e-1At4g26840SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)O.I.H.G.S.X.
0.7187.10.98Contig23027_atContig23027--1e-1At3g26790FUS3 (FUSCA 3)O.I.H.G.S.X.
0.6784.70.98Contig18195_atContig18195--7e+0At3g56500serine-rich protein-relatedO.I.H.G.S.X.
0.6784.70.98Contig3923_atContig3923--4e-1At3g04460PEX12O.I.H.G.S.X.
0.6480.90.98Contig5455_s_atContig5455--4e+0At2g11005glycine-rich proteinO.I.H.G.S.X.
0.5066.90.98Contig18503_atContig18503--1e-1At4g01995unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.898.6GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.798.6GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.898.3GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage